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Update: Why don’t they make a birth control pill for men

In Uncategorized on June 5, 2008 at 11:10 am


post to news.thinkgene.com

But they have………, and like the female pill, it’s based on hormones, – mainly testosterone. According to a review by John K Amory et al., Testosterone mixed with second agents like Progestogens and GnRH-antagonists is able to suppress spermatogenesis to zero in 80-90 % of men and give near completion suppression in the rest.

Thus, the more relevant question must be: why aren’t men taking their birth control pill ?

Well one reason can be that men could be facing an injection rather than a pill, – and needles are psychological barriers to many, – men and women alike.

Another reason is men being hormonal (sic)…..mixed with a fear of possible side effects. But then again, side effects may not be a major issue since, in gym’s and athletes arena’s around the world, many men are taking these hormones, exactly because of the side effects to infertility – improved athletic performance and muscle mass. Thus, one would think that these side effects were desirable for a lot of men.

For men, it looks as though the purpose of infertility just doesn’t quite cut it as reason good enough for taking your pill, even if the side effects have a positive spin or are minimized. Men are simply shying away from hormonal treatment to stop spermatogenesis, for whatever reason.

Aternatives then, are needed since according to MaleContraceptives.org contrary to what can be concluded from the perspectives mentioned above, there is an expressed will amongst men to use pharmaceutical contraceptives. They list projects for improved hormonal therapies as well as non-hormonal alternatives already in existence or in development. They even list a number of places where clinical trials are happening. Trials you could join presumably, if interested.

A company that is not listed on their site (yet) is Spermatech which is a (the only ?) company working on a non-hormonal pharmaceutical contraceptive. Their drug target is a sperm specific protein that is crucial for sperm motility. If you knock out the activity of this protein, you also knock down the sperms ability to swim and hence it’s ability to fertilize the egg. And it all should happen without effects in the rest of the body since the protein is sperm specific, – or so the theory goes. Because, It is a long way from drug target to approved pharmaceutical. So far though it’s all looking very promising.

No matter which drug or treatment reaches the market, it’s about time we as men, share the burden of pharmaceutical contraception with our women. Possibly, we could even save some lives since todays female birth control pill is not risk free.

More blogging on this issue can be found by searching the phrase “Why don’t they make a birth control pill for men” at ScienceBlogs.

Original post here.

Disclaimer: I own shares in Spermatech AS. Their patents were issued based on scientific publications where I was lead author.

And now suddenly, we don’t need genetic counselors anymore…..?

In Uncategorized on May 30, 2008 at 12:16 pm

With this post, my posts on genetic counseling are now a trilogy (which somewhat unfairly puts them in the same category as some amazing literature, – and films).

From a recent Nature News Special Report:

No one denies that genetic test results can be life-altering for some individuals. But research by Theresa Marteau, a health psychologist at King’s College London, and others has shown that most people are remarkably resilient in the face of traumatic genetic test results. They typically report feeling anxious or depressed around the time of testing, but these effects dwindle within a few months.

This fits well with my first post where I argued that the need for genetic counselors was overrated. After reading an article on Huntington’s disease however, I changed my mind, and wrote another blog post. But now, this quote contradicts what I thought was my final conclusions and I am left wondering where I stand … again:

Studies by Aad Tibben, a psychologist and psychotherapist at Leiden University Medical Centre in the Netherlands, and his colleagues showed that people who took predictive tests for Huntington’s disease mostly recovered from the shock. Many actually felt more in control after testing because they could make arrangements for care, or even for euthanasia.

And I am not the only one who is confused on these matters

With so much uncertainty about how people deal with genetic risk, is genetic counselling necessary or helpful for people undergoing the less definitive tests for an increased propensity for heart conditions or diabetes? “I’m convinced it’s necessary,” says Tibben. But he and others in the field acknowledge that there is little in the way of controlled trials to support their belief.

I have decided to go with the conclusion that the best thing to do is probably to do the genetic counseling,… and then evaluate,… and then stop doing it if it doesn’t work. This simply because to my knowledge, genetic counseling doesn’t do any harm. It may even do some good even if the effect is all placebo:

“……….Did the counsellor help the patient understand complicated risks, or just provide some face-to-face contact and empathy in a confusing medical world?

So, until someone comes out with a study that says that genetic counseling is harmful, this post will reflect my final (!?) postition. End of story (trilogy).

How everything is a mess and still ok

In Uncategorized on May 26, 2008 at 9:09 am


post to news.thinkgene.com

I have recently finished reading a Nature news feature on noise in gene expression (The Cellular Hullabaloo). It left me with this increased understanding of cellular processes and in terms of controlling chaos, fitted nicely with something I have blogged about before, which is Hsp’s (especially Hsp90).

According to this news feature, several studies have found that there are significant differences in the expression of genes both in duration and strength, even between cells that were expected to be identical. This contradicts the current notion of gene expression as an orderly sequential and structured phenomenon. These studies seem to indicate that gene expression occurs randomly, throughout the whole genome.

How these cells are still able to differentiate in a predictable manner,…… and perform specialized functions in concert with thousands of other cells,…….. to build a functional multicellular organism, is a mystery to me. And it is enigmatic to the researchers behind these studies as well:

“People are fascinated by how we do what we do despite this noise.” — James Collins

and

“People ask how come an organism works so well. Perhaps it doesn’t work so well. Perhaps organisms without these fluctuations would outcompete us.” – Johan Paulsson

How the noise came about and why it persists is still somewhat unclear, but benefits from such chaotic conditions may arise from:

1. Controlling randomness (noise) requires a lot of energy, the more chaos the less energy spent. Consequently, only the most critical cellular processes are under tight control, and the rest are more or less random.

2. Expression noise may enable cells to fight off threats. Say a certain level of protein is required to survive a toxic compound attack. Then having cells with sufficient levels of defender protein is more probable in a (noisy) cell population with varying gene expression levels, than in cell populations with a constant level of expression.

3. Randomness may ensure variation in differentiation. An example given in the news feature is the differentiation of blue and green light sensing photoreceptors in drosophila.

So, the noise is there for a reason. Noise, or more precisely – random fluctuation, is an ubiquitous cellular phenomenon. But cells of a given type still end up with similar morphology and similar functionality. The beauty of nature is how the randomness is controlled just enough to achieve the minimum amount of order necessary for preserving functionality. Also, in keeping the random events, flexibility is preserved for future adaptation.

The chaos extends further than gene-expression. If you also consider variations in insertions/deletions, gene copy number and epigenetic differences, the potential for random variation at the gene level becomes evident. To control some of this genetic randomness you have proteins like Hsp90 that masks genetic variation at the transcription level (or folding level to be precise). This is an important control-mode for some of the chaos (DNA sequence variation and mutations) and at the same time it enables sudden exposure of chaos to achieve rapid morphological evolution if needed. I am pretty sure that similar (or very different) control mechanisms will be discovered for gene expression noise in the future.

The noisy expression story is another illustration of how we are not just our genes. The DNA-sequence may be a defining starting point, but there are levels and levels of variation on top of that. As multicellular and evolving organisms, we are constantly balancing between chaos and order. The chaos-level is maximized to minimize energy expenditure and to ensure a multitude of possible paths to follow in an organisms future biological evolution.

The balance is oh so beautiful, it’s called nature.

Quote of the month

In Uncategorized on May 22, 2008 at 8:02 am

The May version of quote of the month comes from the CONCLUDING REMARKS in “Genomics and equal opportunity ethics” by A W Cappelen et al.:

“……….We have argued that genomics can provide us with information necessary to come closer to the ideal of equal opportunity ethics. Lack of genetic information has led to health policies that in some cases hold people responsible for too much and in some cases hold them responsible for too little. Recent advances in genomics may thus not only improve clinical practice and public health, but also help us to design fairer health policies………”

Note: quote removed from it’s original context (original article via PredictER News Brief) where also the dark side of the genomics age is elaborated on.

New post on Sciphu.com, the advantages of blog publishing

In Uncategorized on May 19, 2008 at 8:54 am

There’s a new article on SciPhu.com. It’s about pharmacogenetics…..but what I really want to communicate is how superior this way of publishing is:

Here’s what I have experienced while blog-publishing:

1. It is fast. I decided I would publish some data that I already had presented in a talk, since this data wasn’t really fit for a major article. It took me an hour or so to write up and publish the whole thing.

2. One of the reasons it is fast is that it is less rigid in its form. You yourself decide on formatting, wording, whether to use a reference list and how to format this list, or if you would rather have your references as hyperlinks in the text.

3. Papers published on SciPhu.com get hits from google searches. Since the whole text is searchable the hit-probability for people looking for your subject is higher than that on pubmed or any other site where searches are based on title, abstract and keywords. An example is the gel-drying paper which is hit daily by google searches like “SDS-PAGE cracking” or “vacuum drying PAGE” or similar. Although in this case, you could surely search laboratory method web-sites, the fastest way to find your information is probably a google search. This means that any paper published like this has the potential of high visibility. In addition you can get day by day hit statistics, which is probably interesting to many.

4. Communication with referees is interactive and the paper can remain fluid in its format and content. Since publishing like this is rapid it is also bound to be more error-prone. But, by interacting through the comments section, the paper can be continuously revised to correct errors or unclear phrasings. Also the number of referees can be many and since everyone can see the referee-comments, replying to these referees can be done by anyone, not only the authors. Thus, the papers will be less perfect to start off, but may end up better than those in a traditional peer review journal.

5. It is open access and free to everyone. Anyone’s welcome to publish anything as long as it is scientific. This is true scientific democracy.

7. SciPhu.com lacks the “rigid editor” entry point, and it always will.

This publishing solution is not very high tech (but, it may evolve to be), it does not enjoy the recognition that many of the high ranked science journals do (but with active commenting, it can).

As with so many other things in professional life, the potential lies in the numbers. Only if many of us scientists are willing to use publishing channels like these, will it become a success.

This is the age of the web and no-limit communication accessible to all. My recommendation is: Say goodbye to the stale publishing standards of yesterday and come participate in the interactive self-justice of web-publishing.

Updated Normality

In Uncategorized on May 15, 2008 at 3:15 pm

Just to remind myself:

Something “Constant” exists only on paper or in silico.

In life “Normal” = Variation

Variation can be Random or have a Trend, but even the Trend Fluctuates and is never Constant.

If this is true then the terms “Constant” and “Life” are incompatible. And consequently, “Living a Normal Life” cannot possibly be Defined.

Updated from previous post “Normality

Trading places

In Uncategorized on May 8, 2008 at 1:48 pm

Here’s an easy way of setting things right when they are obviously wrong in the first place. Just do a switch !

This is a quote from a disturbed person taken from nature news sidelines:

“Love of God and compassion and empathy leads you to a very glorious place, and science leads you to killing people.”

Setting it right by switching God and Science:

“Love of science and compassion and empathy leads you to a very glorious place, and God leads you to killing people.”

Now, when the right order is restored like this, the statement is almost divine in it’s simplicity, isn’t ?

Ok then, everyone can have IVF….

In Uncategorized on May 6, 2008 at 8:33 pm

I have clearly entered an argue against myself phase, and since reading this article quoted on Genomeboy pushed me further into this “disagree with self” state, I am going to argue against another one of my posts.

In a previous post called “Should public health care pay for IVF-treatment ?” I argued that public health care, with its limited resources, should not prioritize ART/IVF, especially not in developing countries where health resources can be very limited indeed. This spurred a lengthy discussion with Faith over at Invisible Grief. I must admit that I learned a lot from that discussion. Now, since I am also considering Transhumanism, it is time to reevaluate where I stand on this subject. Transhumanism is all about giving everyone access to biomedical technology and also about embracing the widespread use of such technologies to enhance our biological selves.

Whatever I may land on on Transhumanism however, I have reached the conclusion that everyone should have access to ART/IVF. This I guess, is in contrast to arguments in my previous post.

……But, I still think that this treatment should be financed separately (outside of the public health budgets), either through dedicated public funds or privately. Such a separation will clearly state that ART is a desired medical technology either as a part of a policy on reproduction for everyone or as a part of a womens rights plan. The key criterion for such an endorsement of ART/IVF must be universal and unrestricted access to assisted reproduction technologies for everyone.

….Accessible to everyone………herein lies the crux…….Answer: It must be publicly funded. Thus, I stand corrected (by me), – again.

Now this is why we need genetic counselors

In Uncategorized on April 25, 2008 at 12:00 pm

After reading “Living at risk: Concealing risk and Preserving Hope“, which was an eye-opening experience, I am ready to argue against myself and the arguments in my previous post “Now why do we need genetic counselors ?”.

In this post I predicted that genetic counselors may soon be obsolete because nobody cares about low-risk alleles. In addition I argued that information on high-risk alleles is better managed by physicians.

The not caring bit is still true (unfortunately) as far as I know, but after reading the above mentioned paper, I need to modify my opinion on high risk tests. High risk tests in this context, are tests that if positive, means developing disease in the near future. Testing for Huntington disease is a model example of such tests since:

“Penetrance, the likelihood of showing symptoms of the disease if the associated genetic mutation is present, is virtually 100%.”

Thus, this is a clear medical case and a physician should be able to give adequate counsel to the patient. But, the issues a practitioner would face are so much more than medicine alone and recommendations for counseling goes wider than what is expected of a primary care physician:

Nearly every participant with children experienced terrible difficulty in talking to their children about their risk, even when the children were grown. We infer from this difficulty that practitioners could, and should, find ways to help people at risk develop plans for educating their children at an appropriate age. We envision such plans to be developmentally based, geared to answering questions at the child’s level, as well as being persistent and gradual in the presentation of the issues of importance.

This to me, sounds like genetic counseling. Further arguments for genetic counseling comes from the recommendations to the clinicians:

Clinicians also need to reflect on their own beliefs and biases about genetic testing, and to examine the extent to which those beliefs and biases present themselves in their care for people at risk for HD. Primary care health professionals need to be cognizant of the fact that just because a test can be done does not mean that it should be done. What these men and women are telling us is that it is not safe to assume that genetic testing for incurable diseases will necessarily provide information that is wanted, or needed, by those at risk and that testing may have a significant negative impact on the lives of their patients.

Objectively reflecting on genetic testing as well as telling the patient that it may actually be wise not to get tested, are probably things a genetic counselor would do better than the primary care physician.

So, the conclusion must be: I was wrong, we need genetic counselors. Reading “Living at risk: Concealing risk and Preserving Hope” will tell you this. In adition it will teach you that 80-85 % of at risk individuals elects not to undertake predictive genetic testing. They do so to survive since a lack of hope can be devastating:

Something that my uncle said, that I think really stuck with me, is he wrote a suicide note. He said that there’s such a big difference between living with hope and living with knowledge. And that he would take the living with hope any day. And so he really did not think we needed to know, one way or another.

…………and, proper counseling (not only genetic) may be a help for people in handling their life at risk since:

It is noteworthy that several participants said the interview for this study was their first opportunity to talk about the emotional side of HD, despite their years of experience with neurological, cognitive, and psychomotor testing …………… We think that unstructured interviews might actually change the views and actions of the participants with respect to their careful concealment of risk and their preservation of hope.

This is probably true. Regardless of the extent of counseling, it seems to me that genetic counseling for these patients and their family members is a good starting point.

The final take home message must be that not testing for a condition has significant value, especially when treatment options are scarce or non-existent.

Hope is sometimes a life saver. Knowledge on the other hand, can put peoples lives in ruins. Use this as a guiding light if you will, – I know I am going to.

Quote of the month

In Uncategorized on April 24, 2008 at 11:51 am

Key features of the “Open Consent” policy from the Personal Genome Project (Nat Rev Genet. 2008 May;9(5):406-11)

“Open consent as part of the Personal Genome Project implies that research participants
accept that:
• Their data could be included in an open-access public database.
• No guarantees are given regarding anonymity, privacy and confidentiality.
• Participation involves a certain risk of harm to themselves and their relatives.
• Participation does not benefit the participants in any tangible way.
• Compliance with monitoring of their well-being through quarterly questionnaires is required.
• Withdrawal from the study is possible at any time.
• Complete removal of data that have been available in the public domain may not be possible.
The moral goal of open consent is to obtain valid consent by effectuating veracity as a
precondition for valid consent and effectuating voluntariness through strict eligibility criteria,
as a precondition for substantial informed consent.”

While it is commendable to be this honest, one must wonder what it will do to participation recruitment. I have knowledge in the field and I have a fundamentally positive attitude towards these research projects, but even I would think twice before accepting this, what then will the layman do ?

I cannot help but wishing strongly for this approach to work though. If this is the consent for the future then the world is better off than I thought, – and that is most definitely a good thing.